Publication overview
Computational methods to investigate and manage molecular networks in cells
van Beek, J. H.Hettling, H.Binsl, T. W.2009
Validation of in silico enzyme activity predictions using in vitro enzyme activity measurements
van Beek, D.2009
Spatial phenomena in multicellular oscilation simulation
Tijsma, L.2009
Prioritization of candidate cancer genes by combining mouse retroviral insertional mutagenesis data and human array comparative genomic hybridization data using a gene-centric approach
ten Hoeve, J.2009
Observations on semantic annotation of microscope images for life sciences
Slob, J.Kallergi, A.Verbeek, F.2009
Sparse multi-class prediction based on the Group Lasso in multinomial logistic regression
Sandersen, M.2009
Multinomial Language Learning, Investigations into the Geometry of Language
Raaijmakers, S.2009
Ordinal multi-class molecular classification
Pfeiffer, O. P.2009
Integrative bioinformatics of metabolic networks
Notebaart, R. A.2009
http://dare.ubn.kun.nl/bitstream/2066/74411/1/74411.pdf
Prediction of overexpression success of enzymes in ASpergillus niger using sequence-based features
Nijkamp, J. F.2009
An in silico tumor growth simulation model for study of cancer hallmark acquisition
Nierop, J.2009
Tutorial on system identification of polynomial and of rational systems
Nemcova, J.van Schuppen, J. H.2009
Realization theory of Nash systems
Nemcova, J.Petreczky, M.van Schuppen, J. H.2009
Structural and global identifiability of parametrized rational systems
Nemcova, J.2009
Rational systems in control and system theory
Nemcova, J.2009
http://dare.ubvu.vu.nl/bitstream/1871/15506/4/4abstract_english.pdf
Algebraic reachability of rational systems
Nemcova, J.2009
Webservices for transcriptions
Neerincx, P. B.2009
http://library.wur.nl/WebQuery/wda/lang/1917256
Automated metabolic network reconstruction by exploiting functional homology", pp
Melia, T.2009
Gesture recognition by computer vision: an integrap approach
Lichtenauer, J. F.2009
http://www.narcis.info/publication/RecordID/oai:tudelft.nl:uuid:1136f1...
Graph-based methods for large-scale protein classification and orthology inference
Kuzniar, A.2009
Combining aggregation with perto optimization: a case study in evolutionary molecular design
Kruisselbrink, J. W.Emmerich, M. T. M.Back, T.Bender, A.Ijzerman, A. P.van der Horst,...2009
On the limitations of adaptive resampling in using the student's t-test evolution strategies
Kruisselbrink, J. W.Emmerich, M. T. M.Back, T.2009
A comparison of supervised gene set searching algorithms for outcome prediction of breast cancer
Kooter, R.2009
Industrial process diagnostics
Kok, J. N. S.2009
Inferring the influence of cultivation parameters on transcriptional regulation
Knijnenburg, T. A.2009
http://www.narcis.info/publication/RecordID/oai:tudelft.nl:uuid:d2d8c7...
Onto-Frogger: playing with semantic structure
Kallergi, A.verbeek, F. J.2009
The ontology viewer: facilitating image annotation with ontology terms in the CSIDx imaging database
Kallergi, A.Bei, Y.Verbeek, F.2009
Comprehensive Chemometrics
Hoefsloot, H. C.Vis, D. J.Westerhuis, J. A.Smilde, A. K.Jansen, J. J.2009
The INCF Digital Atlasing Program: Report on Digital Atlasing Standards in the Rodent Brain.
Hawrylycz, M.Boline, J.Burger, A.Hashikawa, T.Johnson, G.A.Martone, M.,Ng, L.Nissanov...2009
Bayesian networks for omcis data
Gavai, A. K.2009
http://library.wur.nl/WebQuery/wda/lang/1908479
Signaling pathways in cancer: a matter of dosage
Gaspar, C.2009
http://publishing.eur.nl/ir/repub/asset/14964/090226_Gaspar%2C%20Claud...
Chemogenomics: looking at biology through the lens of chemistry
Doddareddy, M. R.van Westen, G. J. P.van der Horst, E.Peironcely, J. E.Corthals, F.Ij...2009
Integration of information from different ontologies
Dmitrieva, J.verbeek, F. J.2009
Node-Link and containment methods in ontology visualization
Dmitrieva, J.verbeek, F. J.2009
Data Mining Scenarios for the Discovery of Subtypes and the Comparison of Algorithms
Colas, F.2009
Finding maximal frequent subgraphs in biological networks
Bosnacki, D.Ligtenberg, W.P.A.Hilbers, P.A.J.2009
Computational Genomics for Prokaryotes
Blom, E. J.2009
http://www.rug.nl/corporate/nieuws/archief/archief2009/promoties-orati...
Spatio-Temporal Framwork for Inegrative Analysis of Zebrafish developmental Studies
Belmamoune, M.2009
https://openaccess.leidenuniv.nl/bitstream/1887/14433/5/Front.pdf
In Silico Modelling and Analysis of Ribosome Kinetics and aa-tRNA Competition
Bosnacki, D.Pronk, T. E.de Vink, E. P. Back, R. J.Petre, I.Workshop on Computational Models for Cell Processes, satelite event of FM 2008 2008: 38
A prototype knowledge base for the life sciences
Marshall, M. S.Prud'hommeaux, E.W3C Interest Group 2008
Separable nonlinear models: theory, implementation and applications in physics and chemistry
Mullen, K. M.Vrije Universiteit 2008
Virtual Reality for Final Diagnosis of fetal ambiguous genitalia
Verwoerd-Dikkeboom, C. M.Koning, A. H.Groenenberg, I. A. L.Smit, B.Brezinka, P. J.van...Ultrasound in Obstetrics and Gyneacology 2008
Challenges in plant cellular pathway reconstruction based on gene expression profiling
van Baarlen, P.van Esse, H. P.Siezen, R. J.Thomma, B. P.Trends Plant Sci 2008, 13(1): 44
http://www.ncbi.nlm.nih.gov/pubmed/18155635
Applying a User-centred Approach to Interactive Visualization Design
Wassink, I.Kulyk, O.van Dijk, E. M. A. G.van der Veer, G. C.van der Vet, P. E.Zudilov...Trends in Interactive Visualization 2008: 175
Phenome connections
Oti, M.Huynen, M. A.Brunner, H. G.Trends Genet 2008, 24(3): 103
http://www.ncbi.nlm.nih.gov/pubmed/18243400
Conservation of divergent transcription in fungi
Kensche, P. R.Oti, M.Dutil, B. E.Huynen, M. A.Trends Genet 2008
Selection of DNA markers
Hoogeboom, H. J.Kosters, W.Laros, J. F. J.Transactions on Systems, Man, and Cybernetics 2008(38): 26
Membrane Systems with Proteins Embedded in Membranes
Brijder, R.Cavaliere, M.Riscos-Nunez, A.Rozenberg, G.Sburlan, D.Theor.Comput.Sci. 2008, 404: 26
Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis
Waaijenborg, S.Verselewel de Witt Hamer, P. C.Zwinderman, A. H.Stat.Appl.Genet.Mol.Biol. 2008, 7
http://www.ncbi.nlm.nih.gov/pubmed/18241193
A classification model for the Leiden proteomics competition
Hoefsloot, H. C.Smit, S.Smilde, A. K.Stat.Appl.Genet.Mol.Biol. 2008, 7(2)