Publication overview
Proteomic profiling of plasma and serum in elderly patients with delirium
van Munster, Barbaravan Breemen, MarielleMoerland, PerrySpeijer, DaveDe Rooij, Sophia...The Journal of neuropsychiatry and clinical neurosciences 2009, 21(3): 284
http://dx.doi.org/10.1176/appi.neuropsych.21.3.284
Multi-way analysis of lfux distributions across multiple conditions
Verouden, M. P. H.Notebaart, R. A.Westerhuis, J. A.van der Werf, M. J.Teusink, B.Smil...Journal of Chemometrics 2009, 23: 7
Regression by L1 regularization of smart contrasts and sums (ROSCAS) beats PLS and elastic net in latent variable model
ter Braak, C. J. F.Journal of Chemometrics 2009
Suppression of inflammatory signaling in monocytes from patients with coronary artery disease
Schirmer, S. H.Fledderus, J. O.van der Laan, A. M.van der Pouw-Kraan, T. C.Moerland, ...J.Mol.Cell Cardiol. 2009, 46(2): 177
http://www.ncbi.nlm.nih.gov/pubmed/19059264
PDB_REDO: automated re-refinement of X-ray structure models in the PDB
Joosten, R. P.Salzemann, J.Bloch, V.Stockinger, H.Berglund, A. C.Blanchet, C.Bongcam-...J.Appl.Cryst. 2009, 42: 376
Organ-specific attenuation of murine hepatitis virus strain A59 by replacement of catalytic residues in the putative viral cyclic phosphodiesterase ns2
Roth-Cross, J. K.Stokes, H.Chang, G.Chua, M. M.Thiel, V.Weiss, S. R.Gorbalenya, A. E....J Virol. 2009, 83(8): 3743
http://www.ncbi.nlm.nih.gov/pubmed/19176619
Biochemical characterization of arterivirus nonstructural protein 11 reveals the nidovirus-wide conservation of a replicative endoribonuclease
Nedialkova, D. D.Ulferts, R.van den, Born E.Lauber, C.Gorbalenya, A. E.Ziebuhr, J.Sni...J Virol. 2009, 83(11): 5671
http://www.ncbi.nlm.nih.gov/pubmed/19297500
The crystal structures of Chikungunya and Venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket
Malet, H.Coutard, B.Jamal, S.Dutartre, H.Papageorgiou, N.Neuvonen, M.Ahola, T.Forrest...J Virol. 2009, 83(13): 6534
http://www.ncbi.nlm.nih.gov/pubmed/19386706
Phenotyping tea consumers by nutrikinetic analysis of polyphenolic end-metabolites
van Velzen, E. J.Westerhuis, J. A.van Duynhoven, J. P.van Dorsten, F. A.Grun, C. H.Ja...J Proteome Res 2009, 8(7): 3317
http://www.ncbi.nlm.nih.gov/pubmed/19374449
Analyzing longitudinal microbial metabolomics data
Rubingh, C. M.Bijlsma, S.Jellema, R. H.Overkamp, K. M.van der Werf, M. J.Smilde, A. K...J Proteome Res 2009, 8(9): 4319
http://www.ncbi.nlm.nih.gov/pubmed/19624157
The effect of preanalytical factors on stability of the proteome and selected metabolites in cerebrospinal fluid (CSF)
Rosenling, T.Slim, C. L.Christin, C.Coulier, L.Shi, S.Stoop, M. P.Bosman, J.Suits, F....J Proteome Res 2009, 8(12): 5511
http://www.ncbi.nlm.nih.gov/pubmed/19845411
Reordering hydrogen bonds using hamiltonian replica exchange enhances sampling of conformational changes in biomolecular systems
Vreede, J.Wolf, M. G.de Leeuw, S. W.Bolhuis, P. G.J Phys.Chem.B 2009, 113(18): 6484
http://www.ncbi.nlm.nih.gov/pubmed/19358572
Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member
Narayanan, B.Niu, W.Joosten, H. J.Li, Z.Kuipers, R. K.Schaap, P. J.Dunaway-Mariano, D...J Mol.Biol. 2009, 386(2): 486
http://www.ncbi.nlm.nih.gov/pubmed/19133276
Further clinical and molecular delineation of the 9q subtelomeric deletion syndrome supports a major contribution of EHMT1 haploinsufficiency to the core phenotype
Kleefstra, T.van Zelst-Stams, W. A.Nillesen, W. M.Cormier-Daire, V.Houge, G.Foulds, N...J Med Genet 2009, 46(9): 598
http://www.ncbi.nlm.nih.gov/pubmed/19264732
Systems biology towards life in silico: mathematics of the control of living cells
Westerhoff, H. V.Kolodkin, A.Conradie, R.Wilkinson, S. J.Bruggeman, F. J.Krab, K.van ...J Math.Biol. 2009, 58(1): 7
http://www.ncbi.nlm.nih.gov/pubmed/18278498
Improved cholesterol phenotype analysis by a model describing how lipoprotein lifecycle processes depend on particle size
van Schalkwijk, D. B.van Ommen, B.van Bochhove, K.Rensen, P. C. N.Havekes, L. M.van d...J Lipid Research 2009
Influence of clotting time on the protein composition of serum samples based on LC-MS data
Govorukhina, N. I.de, Vries M.Reijmers, T. H.Horvatovich, P.van der Zee, A. G.Bischof...J Chromatogr.B Analyt.Technol.Biomed Life Sci. 2009, 877(13): 1281
http://www.ncbi.nlm.nih.gov/pubmed/18996063
QSAR models for predicting the similarity in binding profiles for pairs of protein kinases and the variation of models between experimental data sets
Sheridan, R. P.Nam, K.Maiorov, V. N.McMasters, D. R.Cornell, W. D.J Chem Inf Model 2009, 49(8): 1974
http://www.ncbi.nlm.nih.gov/pubmed/19639957
Exportin 4 mediates a novel nuclear import pathway for Sox family transcription factors
Gontan, C.Guttler, T.Engelen, E.Demmers, J.Fornerod, M.Grosveld, F. G.Tibboel, D.Gorl...J Cell Biol 2009, 185(1): 27
http://www.ncbi.nlm.nih.gov/pubmed/19349578
The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries
Doreleijers, J. F.Vranken, W. F.Schulte, C.Lin, J.Wedell, J. R.Penkett, C. J.Vuister,...J Biomol NMR 2009, 45(4): 389
http://www.ncbi.nlm.nih.gov/pubmed/19809795
How to do recombination in evolution strategies: An empirical study
Chen, J.Emmerich, M. T. M.Li, R.Kok, J.Back, T.IWINAC 2009
A novel homozygous nonsense mutation in CABP4 causes congenital cone-rod synaptic disorder
Littink, K. W.van Genderen, M. M.Collin, R. W.Roosing, S.de Brouwer, A. P.Riemslag, F...Invest Ophthalmol.Vis Sci 2009, 50(5): 2344
http://www.ncbi.nlm.nih.gov/pubmed/19074807
Correlating MALDI and SIMS imaging mass spectrometric datasets of biological tissue surfaces
Eijkel, G. B.Kukrer Kaleta, B.van der Wiel, I. M.Kros, J. M.Luider, T. M.Heeren, R. M...Interface Anal. 2009, 41(8): 675
http://www3.interscience.wiley.com/cgi-bin/fulltext/122512410/PDFSTART
Lef1 plays a role in patterning the mesoderm and ectoderm in Xenopus tropicalis
Roel, G.Gent, Y.Peterson-Maduro, J.Verbeek, F.Destree, O.Int.Journal of Developmental Biology 2009
http://www.ncbi.nlm.nih.gov/pubmed/19123129
Zebrafish development and regeneration: new tools for biomedical research
Brittijn, S. A.Duivesteijn, S. J.Belmamoune, M.Bertens, L. F.Bitter, W.de Bruijn, J. ...Int J Dev.Biol. 2009, 53(5): 835
http://www.ncbi.nlm.nih.gov/pubmed/19557689
Personalization of tagging systems
Wang, J.Clements, M.Yang, J.de Vries, A. P.Reinders, M. J. T.Information processing & management 2009, 46: 58
http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6VC8-4WWFN9R-...
The influence of personalization on tag query length in social media search
Clements, M.de Vries, A. P.Reinders, M. J. T.Information processing & management 2009: 1
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VC8-4WCT02F...
Predicting metabolic fluxes using gene expression differences as constrains
van Berlo, R. J. P.de Ridder, D.Daran, J. M.Daran-Lapujade, P. A. S.Teusink, B.Reinde...Ieee-acm transactions on computational biology and bioinformatics 2009: 1
http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=05066963
Evolutionary optimization of kernel weights improves protein complex comembership prediction
Hulsman, MarcReinders, Marcel J. T.de Ridder, DickIEEE/ACM Trans Comput Biol Bioinform 2009, 6(3): 427
http://dx.doi.org/10.1109/TCBB.2008.137
Automated detection of regional wall motion abnormalities based on a statistical model applied to multiscale short-axis cardiac MR images
Suinesiaputra, A.Frangi, A. F.Kaandorp, T. A. M.Lamb, H. J.Bax, J. J.Reiber, J. H. C....Ieee transactions on medical imaging 2009, 28(4): 595
http://ieeexplore.ieee.org/search/wrapper.jsp?arnumber=4781566
Dimensionality reduction of hyperspectral data via spectral feautre extraction
Mojaradi, B.brishami-Moghaddam, H.Zoej, M. J. V.Duin, R. P. W.Ieee transactions on geoscience and remote sensing 2009, 47(7): 2091
Sign language perception research for improving automatic sign language recognition
Ten Holt, G. A.Arendsen, J.de Ridder, H.van Doorn, A. J.Reinders, M. J. T.Hendriks, E...Human Vision and Electronic Imaging XIV, Proceedings of SPIE IS&T Electronic Imaging 2009, 7240
A critical view of metabolic network adaptations
Papp, B.Teusink, B.Notebaart, R. A.HFSP J 2009, 3(1): 24
http://www.ncbi.nlm.nih.gov/pubmed/19492021
Folding defects in P-type ATP 8B1 associated with hereditary cholestasis are ameliorated by 4-phenylbutyrate
van der Velden, L. M.Stapelbroek, J. M.Krieger, E.van den Berghe, P. V.Berger, R.Verh...Hepatology 2009, 51(1): 286
http://www.ncbi.nlm.nih.gov/pubmed/19918981
Reduced expression of ATP7B affected by Wilson disease-causing mutations is rescued by pharmacological folding chaperones 4-phenylbutyrate and curcumin
van den Berghe, P. V.Stapelbroek, J. M.Krieger, E.de, Bie P.van de Graaf, S. F.de Gro...Hepatology 2009, 50(6): 1783
http://www.ncbi.nlm.nih.gov/pubmed/19937698
Modulation of glycosphingolipid metabolism significantly improves hepatic insulin sensitivity and reverses hepatic steatosis in mice
Bijl, NoraSokolovic,MilkaVrins, CarlosLangeveld, MirjamMoerland, PerryOttenhoff, Roel...Hepatology 2009, 9999(999)
http://dx.doi.org/10.1002/hep.23175
Situational awareness support to enhance teamwork in collaborative working environments
Kulyk, O.van Dijk, E. M. A. G.van der Vet, P. E.Nijholt, A.Whitworth, B.de Moor, A.Handbook on Socio-Technical Design and Social Networking Systems 2009: 635
Role of the C-terminal linear region of EGF-like growth factors in ErbB specificity
van der Woning, S. P.Venselaar, H.van, Rotterdam W.Jacobs-Oomen, S.van Leeuwen, J. E....Growth Factors 2009, 27(3): 163
http://www.ncbi.nlm.nih.gov/pubmed/19384683
Repertoire and evolution of miRNA genes in four divergent nematode species
de Wit, ElzoLinsen, Sam E. V.Cuppen, EdwinBerezikov, EugeneGenome Research 2009, 19(11): 2064
http://www.ncbi.nlm.nih.gov/pubmed/19755563
Asymmetric relationships between proteins shape genome evolution
Notebaart, R. A.Kensche, P. R.Huynen, M. A.Dutilh, B. E.Genome Biol. 2009, 10(2)
http://www.ncbi.nlm.nih.gov/pubmed/19216750
Expansion of the human mitochondrial proteome by intra- and inter-compartmental protein duplication
Szklarczyk, R.Huynen, M. A.Genome Biol 2009, 10(11)
http://www.ncbi.nlm.nih.gov/pubmed/19930686
High-resolution genetic mapping of mammalian motor activity levels in mice
Kas, M. J. H.de Mooij-van Malsen, J. G.de Krom, M.van Gassen, K. L. I.van Lith, H. A....Genes, Brain, and Behavior 2009, 8(1): 13
http://www.ncbi.nlm.nih.gov/pubmed/18721260
The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation
Soler, E.ndrieu-Soler, C.de, Boer E.Bryne, J. C.Thongjuea, S.Stadhouders, R.Palstra, ...Genes Dev 2009, 24(3): 277
http://www.ncbi.nlm.nih.gov/pubmed/20123907
Enhancing search space diversity in multi-objective evloutionary drug molecule desing using niching
Kruisselbrink, J. W.Aleman, A.Emmerich, M. T. M.Ijzerman, A. P.Bender, A.Back, T.van ...GECCO 2009
Next-generation sequencing approaches in genetic rodent model systems to study functional effects of human genetic variation
Guryev, VictorCuppen, EdwinFEBS Letters 2009, 583(11): 1668
http://www.ncbi.nlm.nih.gov/pubmed/19379744
Gaucher disease: a model disorder for biomarker discovery
Boot, R. G.van Breemen, M. J.Wegdam, W.Sprenger, R. R.de, Jong S.Speijer, D.Hollak, C...Expert Rev Proteomics 2009, 6(4): 411
http://www.ncbi.nlm.nih.gov/pubmed/19681676
Stability from structure: metabolic networks are unlike other biological networks
van Nes, P.Bellomo, D.Reinders, M. J. T.de Ridder, D.EURASIP J Bioinform Syst Biol 2009
http://dx.doi.org/10.1155/2009/630695
Video enhancement and restoration
Lagendijk, R. L.Biemond, J.Rares, A.Reinders, M. J. T.The essential guide to video processing -second edition 2009: 69
http://www.amazon.com/Essential-Guide-Video-Processing/dp/0123744563/r...
Talking to chromatin: post-translational modulation of polycomb group function
Niessen, H. E.Demmers, J. A.Voncken, J. W.Epigenetics.Chromatin. 2009, 2(1): 10
http://www.ncbi.nlm.nih.gov/pubmed/19723311
Cotranslational assembly of the yeast SET1C histone methyltransferase complex
Halbach, Andr ªZhang, HaidiWengi, AgnieszkaJablonska, ZofiaGruber, Isabel M. L.Halbei...The EMBO Journal 2009, 28(19): 2959