Publication overview
Identification of two new serum protein profiles for renal cell carcinoma
Engwegen, Judith Y. M. N.Mehra, NivenHaanen, John B. A. G.Schellens, Jan H. M.Voest, ...Oncology Reports 2009, 22(2): 401
http://www.ncbi.nlm.nih.gov/pubmed/19578783
Serum protein profiling for diagnosis of breast cancer using SELDI-TOF MS
Gast, M. C.Van Gils, C. H.Wessels, L. F.Harris, N.Bonfrer, J. M.Rutgers, E. J.Schelle...Oncol.Rep. 2009, 22(1): 205
http://www.ncbi.nlm.nih.gov/pubmed/19513525
Identification of two new serum protein profiles for renal cell carcinoma
Engwegen, J. Y.Mehra, N.Haanen, J. B.Schellens, J. H.Voest, E. E.Beijnen, J. H.Oncol.Rep. 2009, 22(2): 401
http://www.ncbi.nlm.nih.gov/pubmed/19578783
Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism
Waagmeester, A.Pezik, P.Coort, S.Tourniaire, F.Evelo, C.Rebholz-Schuhmann, D.OMICS. 2009
ProGMap: an integrated annotation resource for protein orthology
Kuzniar, A.Lin, K.He, Y.Nijveen, H.Pongor, S.Leunissen, J. A.Nucleic Acids Res 2009, 37
http://www.ncbi.nlm.nih.gov/pubmed/19494185
Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity
Jaworski, J.Kapitein, L. C.Gouveia, S. M.Dortland, B. R.Wulf, P. S.Grigoriev, I.Camer...Neuron 2009, 61(1): 85
http://www.ncbi.nlm.nih.gov/pubmed/19146815
Minimum spanning tree based one-class classifier
Juszczak, P.Tax, D. M. J.Pekalska, E. M.Duin, R. P. W.Neurocomputing 2009, 72: 1859
http://ict.ewi.tudelft.nl/~duin/papers/neurocomp_09_occ.pdf
R SubtypeDiscovery Vignette: a data mining scenario for the inference of subtypes by cluster analysis
Colas, F.NBIC Interface magazine 2009
Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome
van Werven, Folkert J.van Teeffelen, Hetty A. A. M.Holstege, Frank C. P.Timmers, H. T...Nature Structural & Molecular Biology 2009, 16(10): 1043
http://www.ncbi.nlm.nih.gov/pubmed/19767748
Statistical Methods for Analysis of High-Throughput RNA Interference Screens
Birmingham, AmandaSelfors, Laura M.Forster, ThorstenWrobel, DavidKennedy, Caleb J.Sha...Nature methods 2009, 6(8): 569
Redox-sensitive cysteines bridge p300/CBP-mediated acetylation and FoxO4 activity
Dansen, Tobias B.Smits, Lydia M. M.van Triest, Miranda H.de Keizer, Peter L. J.van Le...Nature Chemical Biology 2009, 5(9): 664
http://www.ncbi.nlm.nih.gov/pubmed/19648934
New protein structures replace the old. Dutch software to weed out erros in Protein Data Bank
Sanderson, K.Nature 2009, 459(7250): 1038
http://www.ncbi.nlm.nih.gov/pubmed/19553956
A high-throughput splinkerette-PCR method for the isolation and sequencing of retroviral insertion sites
Uren, A. G.Mikkers, H.Kool, J.van der, Weyden L.Lund, A. H.Wilson, C. H.Rance, R.Jonk...Nat.Protoc. 2009, 4(5): 789
http://www.ncbi.nlm.nih.gov/pubmed/19528954
High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology
Simonis, M.Klous, P.Homminga, I.Galjaard, R. J.Rijkers, E. J.Grosveld, F.Meijerink, J...Nat Methods 2009, 6(11): 837
http://www.ncbi.nlm.nih.gov/pubmed/19820713
CASD-NMR: critical assessment of automated structure determination by NMR
Rosato, A.Bagaria, A.Baker, D.Bardiaux, B.Cavalli, A.Doreleijers, J. F.Giachetti, A.G...Nat Methods 2009, 6(9): 625
http://www.ncbi.nlm.nih.gov/pubmed/19718014
Limitations and possibilities of small RNA digital gene expression profiling
Linsen, S. E.de, Wit E.Janssens, G.Heater, S.Chapman, L.Parkin, R. K.Fritz, B.Wyman, ...Nat Methods 2009, 6(7): 474
http://www.ncbi.nlm.nih.gov/pubmed/19564845
System-wide molecular evidence for phenotypic buffering in Arabidopsis
Fu, J.Keurentjes, J. J.Bouwmeester, H.America, T.Verstappen, F. W.Ward, J. L.Beale, M...Nat Genet. 2009, 41(2): 166
http://www.ncbi.nlm.nih.gov/pubmed/19169256
Jump-starting cancer gene discovery
Uren, A. G.Berns, A.Nat Biotechnol 2009, 27(3): 251
http://www.ncbi.nlm.nih.gov/pubmed/19270673
Human dectin-1 deficiency and mucocutaneous fungal infections
Ferwerda, B.Ferwerda, G.Plantinga, T. S.Willment, J. A.van Spriel, A. B.Venselaar, H....N.Engl.J Med 2009, 361(18): 1760
http://www.ncbi.nlm.nih.gov/pubmed/19864674
Shifts in growth strategies reflect tradeoffs in cellular economics
Molenaar, D.van Berlo, R. J. P.de Ridder, D.Teusink, B.Molecular Systems Biology 2009, 5(323): 1
Adaptable gene-specific dye bias correction for two-channel DNA microarrays
Margaritis, ThanasisLijnzaad, Philipvan Leenen, DikBouwmeester, DianeKemmeren, Patric...Molecular Systems Biology 2009, 5: 266
http://www.ncbi.nlm.nih.gov/pubmed/19401678
Comparison of isotope-labeled amino acid incorporation rates (CILAIR) provides a quantitative method to study tissue secretomes
Roelofsen, H.Dijkstra, M.Weening, D.de Vries, M. P.Hoek, A.Vonk, R. J.Mol.Cell Proteomics. 2009, 8(2): 316
http://www.ncbi.nlm.nih.gov/pubmed/18840871
The Yeast Vacuolar Membrane Proteome
Wiederhold, ElenaGandhi, TejasPermentier, Hjalmar P.Breitling, RainerPoolman, BertSlo...Mol Cell Proteomics 2009, 8(2): 380
http://www.mcponline.org/cgi/content/abstract/8/2/380
In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling
Boersema, P. J.Foong, L. Y.Ding, V. M.Lemeer, S.van, Breukelen B.Philp, R.Boekhorst, ...Mol Cell Proteomics 2009, 9(1): 84
http://www.ncbi.nlm.nih.gov/pubmed/19770167
Histone chaperones ASF1 and NAP1 differentially modulate removal of active histone marks by LID-RPD3 complexes during NOTCH silencing
Moshkin, Y. M.Kan, T. W.Goodfellow, H.Bezstarosti, K.Maeda, R. K.Pilyugin, M.Karch, F...Mol Cell 2009, 35(6): 782
http://www.ncbi.nlm.nih.gov/pubmed/19782028
Detection of pollen grains in multifocal optical microscopy images of air samples
Landsmeer, S. H.Hendriks, E. A.De Weger, L. A.Reiber, J. H. C.Stoel, B. C.Microscopy research and technique 2009, 72(6): 424
Detection of pollen grains in multifocal optical microscopy images of...
The effect of environmental conditions on extracellular protease activity in controlled fermentations of Aspergillus niger
Braaksma, M.Smilde, A. K.van der Werf, M. J.Punt, P. J.Microbiology 2009, 155: 3430
http://www.ncbi.nlm.nih.gov/pubmed/19628562
Mapping the domain of medical informatics
Schuemie, M. J.Talmon, J. L.Moorman, P. W.Kors, J. A.Methods Inf.Med. 2009, 48(1): 76
http://www.ncbi.nlm.nih.gov/pubmed/19151887
DNA Microarray studies of Hematopoietic Subpopulations
Pike-Overzet, K.de Ridder, D.Schonewille, T.Staal, F. J. T.Methods in molecular biology; 506 2009: 403
http://www.springerlink.com/content/u61275158252346q/
Constraint-based probabilistic learning of metabolic pathways from tomato volatiles
Gavai, A. K.Tikunov, Y.Ursem, R.Bovy, A.van Eeuwijk, F.Nijveen, H.Lucas, P. J. F.Leun...Metabolomics 2009
http://www.springerlink.com/content/p4x6t8362321h85h/fulltext.pdf
Metabolic network discovery through reverse engineering of metabolome data
Cakir, T.Hendriks, M. M.Westerhuis, J. A.Smilde, A. K.Metabolomics 2009, 5(3): 318
http://www.ncbi.nlm.nih.gov/pubmed/19718266
Low-dose transdermal estradiol induces breast density and heterogeneity changes comparable to those of raloxifene
Nielsen, M.Raundahl, J.Pettersen, P. C.Loog, M.Karemore, G.Karsdal, M. A.Christiansen...Menopause-the journal of the north american menopause society 2009, 16(4): 785
Atlas-Driven Scan Planning for High-Resolution +‚-ÝSPECT Scanning from Multi-View Photographs: a Pilot Study+¢â‚¬?
Baiker, M.Vastenhouw, BrendanBranderhorst, W.Reiber, J. H. C.Beekman, F. J.Lelieveldt...Medical Imaging 2009:Visualization, Image Guided Procedures and Modeling 2009, 7261: 1
Model driven quantification of left ventricular function from sparse single-beat 3D echocardiography
Ma, M.van Stralen, M.Reiber, J. H. C.Bosch, J. G.Lelieveldt, B. P. F.Medical Imaging 2009: Image processing 2009, 7259: 1
Mining Databases to Mine Queries Faster
Siebes, ArnoPuspitaningrum, Diyah Buntine, Wray L.Grobelnik, MarkoMladenic, DunjaShawe-Taylor, JohnMachine Learning and Knowledge Discovery in Databases, European Conference, ECML PKDD 2009, Volume 2 2009, 5782: 382
An empirical study of a linear regression combiner on multi-class data sets
Zhang, C.Duin, R. P. W.Lecture Notes in Computer Science 2009, 5519: 478
http://www.springerlink.com/content/rr427627564525m2/
Optimal mean-precision classifier
Tax, D. M. J.Loog, M.Duin, R. P. W.Lecture Notes in Computer Science 2009, 5519: 72
http://www.springerlink.com/content/6272101008v4wk7l/
The representation of chemical spectral data for classification
Porro, D.Duin, R. P. W.Talavera, I.Hdez, N.Lecture Notes in Computer Science 2009, 5856: 513
http://www.springerlink.com/content/7444511172521615/fulltext.pdf
A study in representations for face recognition from thermal images
Plasencia, Y.Garca-Reyes, E.Duin, R. P. W.Mendez-Vasquez, H.San-Martin, C.Soto, C.Lecture Notes in Computer Science 2009, 5856: 185
http://www.springerlink.com/content/7444511172521615/fulltext.pdf
Maximum membership scale selection
Loog, M.Li, Y.Tax, D. M. J.Lecture Notes in Computer Science 2009, 5519: 468
http://dx.doi.org/10.1007/978-3-642-02326-2_47
Discriminative shape alignment
Loog, M.Bruijne, M.Lecture Notes in Computer Science 2009, 5636: 459
http://www.springerlink.com/content/r6711404g6326251/fulltext.pdf
Person independent 3D sign language recognition
Lichtenauer, J. F.Ten Holt, G. A.Reinders, M. J. T.Hendriks, E. A.Lecture Notes in Computer Science 2009, 5085
A labelled graph based multiple classifier system
Lee, W. J.Duin, R. P. W.Lecture Notes in Computer Science 2009, 5519: 201
A Combine-Correct-Combine Scheme for Optimizing Dissimilarity-Based Classifiers
Kim, S. W.Duin, R. P. W.Lecture Notes in Computer Science 2009, 5856: 425
http://www.springerlink.com/content//03t13064250112r3/
A clustering based method for edge detection in hyperspectral images
Dinh, V. C.Leitner, R.Paclik, P.Duin, R. P. W.Lecture Notes in Computer Science 2009, 5575: 580
Exploiting Positive and Negative Graded Relevance Assessments for Content Recommendation
Clements, M.de Vries, A. P.Reinders, M. J. T.Lecture Notes in Computer Science 2009, 5427: 155
http://www.springerlink.com/content/x14748568103r8w1/fulltext.pdf
Clustering-based construction of hidden Markov models for generative kernels
Bicego, M.Cristani, M.Murino, V.Pekalska, E. M.Duin, R. P. W.Lecture Notes in Computer Science 2009, 5681: 466
A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classification study
Den Boer, Monique L.van Slegtenhorst, MarjonDe Menezes, Renée X.Cheok, Meyling H.Buij...The Lancet Oncology 2009, 10(2): 125
http://www.ncbi.nlm.nih.gov/pubmed/19138562
Local cytokine concentrations and oxygen pressure are related to maturation of the collateral circulation in humans
Schirmer, Stephanvan Royen, NielsMoerland, PerryFledderus, JoostHenriques, Jos ªvan d...Journal of the American College of Cardiology 2009, 53(23): 2141
http://dx.doi.org/10.1016/j.jacc.2009.02.049
Gene expression profiles of progestin-induced canine mammary hyperplasia and spontaneous mammary tumors
Rao, N. A. S.van Wolferen, M. E.Gracanin, A.Bhatti, S. F. M.Krol, M.Holstege, F. C.Mo...Journal of Physiology and Pharmacology: An Official Journal of the Polish Physiological Society 2009, 60: 73