Publication overview
Isolation of llama antibody fragments for prevention of dandruff by phage display in shampoo
Dolk, E.van der Vaart, M.Lutje Hulsik, D.Vriend, G.de Haard, H.Spinelli, S.Cambillau,...Appl Environ Microbiol 2005, 71(1): 442
Genome trees and the nature of genome evolution
Snel, B.Huynen, M. A.Dutilh, B. E.Annu Rev Microbiol 2005, 59: 191
Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish
van der Meer, D. L.van den Thillart, G. E.Witte, F.de Bakker, M. A.Besser, J.Richards...Am.J.Physiol Regul.Integr.Comp Physiol 2005, 289(5)
http://www.ncbi.nlm.nih.gov/pubmed/15994372
Measurement of hypoxia-related parameters in bronchial mucosa by use of optical spectroscopy
Bard, M. P.Amelink, A.Hegt, V. N.Graveland, W. J.Sterenborg, H. J.Hoogsteden, H. C.Ae...Am J Respir Crit Care Med 2005, 171(10): 1178
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
From sequence to structure and back again
Simossis, V. A.2005
TreeSom: Cluster Analysis in the Self-Organizing Map
Samsonova, E. V.Kok, J. N.Ijzerman, A. P.2005: 429
Modelling and remodelling in Bone Tissues
Ruimerman, R.2005
Experimental DNA Computing
Henkel, C. V.2005
Advancces in Mining Graphs, Trees and Sequences
De Raedt, L.Washio, T.Kok, J. N.2005: 220
Frequent itemsets for genomic profiling
de Graaf, J. M.de Menezes, R. X.Boer, J. M.Kosters, W. A.2005, 3695: 104
The Breakpoint Graph in Ciliates
Brijder, R.Hoogeboom, H. J.Rozenberg, G. al, M. R. B. e2005, 3695: 128
Mathematical studies of the dynamics of antibiotic resistance
Bootsma, M. C. J.2005
DRESS: a database of REfined solution NMR structures
Nabuurs, S. B.Nederveen, A. J.Vranken, W.Doreleijers, J. F.Bonvin, A. M.Vuister, G. W...Proteins 2004, 55(3): 483
http://www.ncbi.nlm.nih.gov/pubmed/15103611
Making optimal use of empirical energy functions: force-field parameterization in crystal space
Krieger, E.Darden, T.Nabuurs, S. B.Finkelstein, A.Vriend, G.Proteins 2004, 57(4): 678
http://www.ncbi.nlm.nih.gov/pubmed/15390263
Validation of protien structures derived by NMR spectroscopy
Spronk, C. A.Nabuurs, S. B.Krieger, E.Vriend, G.Vuister, G. W.Progress in NMR spectroscopy 2004
Large-scale gene expression analysis of human skeletal myoblast differentiation
Sterrenburg, E.Turk, R.Hoen, P. A.van Deutekom, J. C.Boer, J. M.van Ommen, G. J.den D...Neuromuscul Disord 2004, 14(8): 507
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Stable and Efficient Multiple Smoothing Parameter Estimation for Generalized Additive Models
Wood, Simon N.Journal of the American Statistical Association 2004, 99(467): 673
http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...
Bayesian P-Splines
Lang, StefanBrezger, AndreasJournal of Computational and Graphical Statistics 2004, 13(1): 183
http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...
Generalized Cross-Validation for Bandwidth Selection of Backfitting Estimates in Generalized Additive Models
Kauermann, GöranOpsomer, J. D.Journal of Computational and Graphical Statistics 2004, 13(1): 66
http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...
Concepts and tools for NMR restaint analysis and validation
Nabuurs, S. B.Spronk, C. A.Vriend, G.Vuister, G. W.Concepts in Magnetic Resonance 2004: 90
Microarray data analysis: from hypotheses to conclusions using gene expression data
Armstrong, N. J.van de Wiel, M. A.Cell Oncol. 2004, 26(5): 279
http://www.ncbi.nlm.nih.gov/pubmed/15623938
The last mile of the protein folding problem subtitel: A pilgrim's staff and skid-proof boots
Krieger, E.2004
http://webdoc.ubn.ru.nl/mono/k/krieger_e/lastmioft.pdf
GPCRDB information system for G protein-coupled receptors
Horn, F.Bettler, E.Oliveira, L.Campagne, F.Cohen, F. E.Vriend, G.Nucleic Acids Res. 2003, 31(1): 294
http://www.ncbi.nlm.nih.gov/pubmed/12520006
Lef-1 and Tcf-3 transcription factors mediate tissue-specific Wnt signaling during Xenopus development
Roel, G.Hamilton, F. S.Gent, Y.Bain, A. A.Destree, O.Hoppler, S.Curr.Biol 2002, 12(22): 1941
http://www.ncbi.nlm.nih.gov/pubmed/12445388
Empirical Bayes Analysis of a Microarray Experiment
Efron, BradleyTibshirani, RobertStorey, John D.Tusher, VirginiaJournal of the American Statistical Association 2001, 96(456): 1151
http://pubs.amstat.org/doi/abs/10.1198/016214501753382129
The ubiquitous Kronecker product
Loan, Charles F. VanJournal of Computational and Applied Mathematics 2000, 123(1): 85
http://www.sciencedirect.com/science/article/B6TYH-41H9NJX-5/2/18e9fe9...
Euprosterna elaeasa virus genome sequence and evolution of the Tetraviridae family: emergence of bipartite genomes and conservation of the VPg signal with the dsRNA Birnaviridae family
Zeddam, J. L.Gordon, K. H.Lauber, C.Alves, C. A.Luke, B. T.Hanzlik, T. N.Ward, V. K.G...Virology, 397(1): 145
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Critical reasoning on causal inference in genome-wide linkage and association studies
Li, Y.Tesson, B. M.Churchill, G. A.Jansen, R. C.Trends Genet, 26(12): 493
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Data processing pipelines for comprehensive profiling of proteomics samples by label-free LC-MS for biomarker discovery
Christin, C.Bischoff, R.Horvatovich, P.Talanta, 83(4): 1209
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Arterivirus Nsp1 modulates the accumulation of minus-strand templates to control the relative abundance of viral mRNAs
Nedialkova, D. D.Gorbalenya, A. E.Snijder, E. J.PLoS Pathog, 6(2)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Genome-wide computational function prediction of Arabidopsis proteins by integration of multiple data sources
Kourmpetis, Y. A.van Dijk, A. D.van Ham, R. C.ter Braak, C. J.Plant Physiol, 155(1): 271
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Alterations in hepatic one-carbon metabolism and related pathways following a high fat dietary intervention
Rubio-Aliaga, I.de Roos, B.Sailer, M.McLoughlin, G. A.Boekschoten, M. V.van Erk, M.Ba...Physiol Genomics
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
A vision and strategy for the virtual physiological human in 2010 and beyond
Hunter, P.Coveney, P. V.de Bono, B.Diaz, V.Fenner, J.Frangi, A. F.Harris, P.Hose, R.K...Philos Transact A Math Phys Eng Sci, 368(1920): 2595
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Systematic generation of in vivo G protein-coupled receptor mutants in the rat
van Boxtel, R.Vroling, B.Toonen, P.Nijman, I. J.van Roekel, H.Verheul, M.Baakman, C.G...Pharmacogenomics J
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
GPCRDB: information system for G protein-coupled receptors
Vroling, B.Sanders, M.Baakman, C.Borrmann, A.Verhoeven, S.Klomp, J.Oliveira, L.de Vli...Nucleic Acids Res, 39
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Genome-wide assessment of differential roles for p300 and CBP in transcription regulation
Ramos, Y. F.Hestand, M. S.Verlaan, M.Krabbendam, E.Ariyurek, Y.van Galen, M.van Dam, ...Nucleic Acids Res, 38(16): 5396
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Accurate SNP and mutation detection by targeted custom microarray-based genomic enrichment of short-fragment sequencing libraries
Mokry, M.Feitsma, H.Nijman, I. J.de Bruijn, E.van der Zaag, P. J.Guryev, V.Cuppen, E.Nucleic Acids Res, 38(10)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies
Hestand, M. S.Klingenhoff, A.Scherf, M.Ariyurek, Y.Ramos, Y.van Workum, W.Suzuki, M.W...Nucleic Acids Res, 38(16)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Multi-Harmony: detecting functional specificity from sequence alignment
Brandt, B. W.Feenstra, K. A.Heringa, J.Nucleic Acids Res, 38
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Nature Europe site should highlight most productive countries
Evelo, C. T.Waagmeester, A.Nature, 465(7299): 685
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
The BioPAX community standard for pathway data sharing
Demir, E.Cary, M. P.Paley, S.Fukuda, K.Lemer, C.Vastrik, I.Wu, G.D'Eustachio, P.Schae...Nat Biotechnol, 28(9): 935
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
TAPP: A Threshold-Avoiding Proteomics Pipeline
Suits, F.Hoekman, B.Rosenling, T.Bischoff, R.Horvatovich, P.Molecular & Cellular Proteomics
Profiling and identification of cerebrospinal fluid proteins in a rat EAE model of multiple sclerosis
Rosenling, A. I. T.Stoop, M.Attali, A.van Aken, H.Suidgeest, E.Christin, C.Stingl, C....Molecular & Cellular Proteomics
msCompare: a framework for quantitative analysis of label-free LC-MS data for comparative biomarker studies
Hoekman, B.Breitling, R.Suits, F.Bischoff, R.Horvatovich, P.,Molecular & Cellular Proteomics
A critical assessment of statistical methods for biomarker discovery in clinical proteomics
Christin, C.Hoefsloot, H. C. J.Smilde, A. K.Hoekman, B.Bischoff, R.Horvatovich, P.Molecular & Cellular Proteomics
Articulated Whole-Body Atlases for Small Animal Image Analysis: Construction and Applications
Khmelinskii, A.Baiker, M.Kaijzel, E. L.Chen, J.Reiber, J. H.Lelieveldt, B. P.Mol Imaging Biol
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Physiological adaptation of the bacterium Lactococcus lactis in response to the production of human CFTR
Steen, A.Wiederhold, E.Gandhi, T.Breitling, R.Slotboom, D. J.Mol Cell Proteomics
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
A consensus of core protein complex compositions for Saccharomyces cerevisiae
Benschop, J. J.Brabers, N.van Leenen, D.Bakker, L. V.van Deutekom, H. W.van Berkum, N...Mol Cell, 38(6): 916
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Genomic tracing of epidemics and disease outbreaks
Schurch, A. C.Siezen, R. J.Microb Biotechnol, 3(6): 628
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
SYSGENET: a meeting report from a new European network for systems genetics
Schughart, K.Mamm Genome, 21(7): 331
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...