Publication overview
Reducibility of gene patterns in ciliates usingthe breakpoint graph
Brijder, R.Rozenberg, G.Hoogeboom, H. J.Theor.Comput.Sci. 2006
http://www.liacs.nl/~rbrijder/index.shtml#PUBLICATIONS
Time-dependent hierarchical regulation analysis: deciphering cellular adaptation
Bruggeman, F. J.de, Haan J.Hardin, H.Bouwman, J.Rossell, S.van, Eunen K.Bakker, B. M....Syst.Biol.(Stevenage.) 2006, 153(5): 318
http://www.ncbi.nlm.nih.gov/pubmed/16986307
A molecular adaptor in iron-sulfur cluster formation or a frataxin-like protein?
Pastore, C.Adinolfi, S.Huynen, M. A.Rybin, V.Martin, S.Mayer, M.Bukau, B.Pastore, A.Structure 2006, 14(5): 857
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
GTP-Ras disrupts the intramolecular complex of C1 and RA domains of Nore1
Harjes, E.Harjes, S.Wohlgemuth, S.Muller, K. H.Krieger, E.Herrmann, C.Bayer, P.Structure 2006, 14(5): 881
http://www.ncbi.nlm.nih.gov/pubmed/16698549
Augmented embedding of dissimilarity data into (pseudo-) Euclidean space
Harol, A.Pekalska, E. M.Verzakov, S.Duin, R. P. W.Structural, syntactic and statistical pattern recognition 2006, 4109: 613
Structural inference of sensor-based measurements
Duin, R. P. W.Pekalska, E. M.Structural, syntactic and statistical pattern recognition 2006, 4109: 41
A Markov Chain Monte Carlo version of the genetic Agorithm Differential Evolution: easy Bayesian computing for real parameter spaces
ter Braak, C. J. F.Statistics and Computing 2006(16): 239
Assessing genetic effects in survival data by correlating martingale residuals with an application to age at onset of Huntington disease
Wintrebert, C. M.Zwinderman, A. H.Maat-Kievit, A.Roos, R. A.van Houwelingen, H. C.Stat Med 2006, 25(18): 3190
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Approximate sample size calculations with microarray data: an illustration
Ferreira, J. A.Zwinderman, A.Stat Appl Genet Mol Biol 2006, 5
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Why don't you see what I mean? Prospects and limitations od current automatic sign recognition research
Ten Holt, G. A.Hendriks, P.Andringa, T. C.Sign Language Studies 2006, 6: 416
Introducing a population into a steady community: the critical case, the center manifold and the direction of bifurcation
Boldin, B.SIAM Journal on Applied Mathematics 2006: 1424
Item sets that compress
Siebes, A.J, V.van Leeuwen, M.SIAM Conference on Data Mining 2006
http://www.cs.uu.nl/groups/ADA/people/siebes/
Toward automatic reconstruction of a highly resolved tree of life
Ciccarelli, F. D.Doerks, T.Von Mering, C.Creevey, C. J.Snel, B.Bork, P.Science 2006, 311(5765): 1283
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Factor correction as a tool to eliminate between-session variation in replicate experiments: application to molecular biology and retrovirology
Ruijter, J. M.Thygesen, H. H.Schoneveld, O. J.Das, A. T.Berkhout, B.Lamers, W. H.Retrovirology 2006, 3: 2
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
A comparison of gene interaction measures
de Jong, E. D.Siebes, A.Franke, L.RECOMB '06 2006
http://people.cs.uu.nl/dejong/publications/recomb06.pdf
Resolving stoichiometries and oligomeric states of glutamate synthase protein complexes with curve fitting and simulation of electrospray mass spectra
van Breukelen, B.Barendregt, A.Heck, A. J.van den Heuvel, R. H.Rapid Commun Mass Spectrom 2006, 20: 2490
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Specific peptides identified by MALDI-TOF Mass Spectrometry in placental tissue from pregnancies complicated by early onset preclampsia attained by laser capture dissection
de Groot, C. J. M.Guzel, C.Steegers-Theunissen, R. P. M.De Maat, M.Dirkxs, P.Roes, E....Proteomics Clin.Appl. 2006
Comparison of electrophysiological models for human ventricular cells and tissues
ten Tusscher, K. H.Bernus, O.Hren, R.Panfilov, A. V.Prog.Biophys.Mol.Biol. 2006, 90(1): 326
http://www.ncbi.nlm.nih.gov/pubmed/16002127
System reduction of nonlinear positive systems by linearization and truncation positive systems
van Schuppen, J. H.Hardin, H.Proceedings of the 2nd multidisciplinary symposium on positive systems: theory and applications 2006
http://homepages.cwi.nl/%7Eschuppen/papers/publications.htm
Observers for linear positive systems
van Schuppen, J. H.Hardin, H.Proc.International Symposium MTNS 2006
http://homepages.cwi.nl/~schuppen/papers/publications.htm
http://homepages.cwi.nl/~schuppen/papers/publications.html#5
Controlling methicillin-resistant Staphylococcus aureus: quantifying the effects of interventions and rapid diagnostic testing
Bootsma, M. C.Diekmann, O.Bonten, M. J.Proc Natl.Acad.Sci.U.S.A 2006, 103(14): 5620
http://www.ncbi.nlm.nih.gov/pubmed/16565219
Discovery of an RNA virus 3'->5' exoribonuclease that is critically involved in coronavirus RNA synthesis
Minskaia, E.Hertzig, T.Gorbalenya, A. E.Campanacci, V.Cambillau, C.Canard, B.Ziebuhr,...Proc Natl Acad Sci U S A 2006, 103(13): 5108
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Haplotype Block Structure is Conserved across Mammals
Guryev, V.Smits, B. M.van de Belt, J.Verheul, M.Hubner, N.Cuppen, E.PLoS Genet 2006, 2(7)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Traditional biomolecular structure determination by NMR spectroscopy allows for major errors
Nabuurs, S. B.Spronk, C. A.Vuister, G. W.Vriend, G.PLoS Comput Biol 2006, 2(2)
Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens
de Ridder, J.Uren, A.Kool, J.Reinders, M.Wessels, L.PLoS Comput Biol 2006, 2(12)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
The Complementary Extractable and Ester-Bound Lipids in a Soil Profile Under Pine
Nierop, K. G. J.Jansen, B.Hageman, J. A.Verstraten, J. M.Plant Soil 2006: 1
CDNA array analysis of stress-induced gene expression in barley androgenesis
Maraschin, S. D. F.Caspers, M.Potokina, E.Wulfert, F.Graner, A.Spaink, H. P.Wang, M.Physiologia Plantarum 2006(127): 535
Comment on "Linking population-level models with growing networks: a class of epidemic models"
Bootsma, M. C.Diekmann, O.Phys.Rev.E.Stat.Nonlin.Soft.Matter Phys. 2006, 74(1): 18101
http://www.ncbi.nlm.nih.gov/pubmed/16907218
Cell model for efficient simulation of wave propagation in human ventricular tissue under normal and pathological conditions
ten Tusscher, K. H.Panfilov, A. V.Phys.Med.Biol. 2006, 51(23): 6141
http://www.ncbi.nlm.nih.gov/pubmed/17110776
Gene expression profiling to monitor therapeutic and adverse effects of antisense therapies for Duchenne Muscular Dystrophy
t Hoen, P. A. C.Van der Wees, C. S. C.Turk, R.Goyenvalle, A.Danos, O.Garcia, L.van Om...Pharmacogenomics 2006, 7: 281
The interaction between classification and rejection performance for distance-based reject-option classifiers
Landgrebe, T. C. W.Tax, D. M. J.Paclik, P.Duin, R. P.Pattern Recognition Letters 2006, 27: 908
Random subspace method for multivariate feature selection
Lai, C.Reinders, M.Wessels, L.Pattern Recognition Letters 2006, 27: 1067
Artifacts of Markov blanket filtering based on discretized features in small sample size applications
Knijnenburg, T. A.Reinders, M. J. T.Wessels, L. F. A.Pattern Recognition Letters 2006, 27: 709
Experimental study on prototype optimisation algorithms for prototype-based classification in vector spaces
Lozano, M.Sotoca, J. M.Sanchez, J. S.Pla, F.Pekalska, E. M.Duin, R. P.Pattern Recognition 2006, 39: 1827
The straight-chain lipid biomarker composition of dominant biomarss formers along two altitudinal transects in the Ecuadorian Andes
Jansen, B.Nierop, K. G. J.Hageman, J. A.Cleef, A. M.Verstraten, J. M.Organic Geochemistry Org.Geochem. 2006, 37: 1514
Evolutionary algorithms in the optimization of dynamic molecular alignment
Siedschlag, C.Shir, O. M.Back, T.Vrakking, M. J. J.Optics Communications 2006, 264: 511
Cross-Platform Array Comparative Genomic Hybridization (array CGH) Meta-Analysis Separates Hematopoietic and Mesenchymal from Epithelial Tumors
Jong, K.Marchiori, E.van der Vaart, A.Chin, S. F.Carvalho, B.Tijssen, M.Eijk, P. P.va...Oncogene, advanced online publication 2006(10)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes
Tiffin, N.Adie, E.Turner, F.Brunner, H. G.van Driel, M. A.Oti, M.Lopez-Bigas, N.Ouzou...Nucleic Acids Res 2006, 34(10): 3067
Sequence comparison by sequence harmony identifies subtype-specific functional sites
Pirovano, W.Feenstra, K. A.Heringa, J.Nucleic Acids Res 2006, 34(22): 6540
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Cloning and expression of new microRNAs from zebrafish
Kloosterman, W. P.Steiner, F. A.Berezikov, E.de Bruijn, E.van de Belt, J.Verheul, M.C...Nucleic Acids Res 2006, 34(9): 2558
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
BAGEL: a web-based bacteriocin genome mining tool
de Jong, A.van Hijum, S. A.Bijlsma, J. J.Kuipers, O. P.Nucleic Acids Res 2006, 34
Mouse microRNA profilies determined with a new and sensitive cloning method
Takada, S.Berezikov, E.Yamashita, Y.Lagos-Quitana, M.Kloosterman, W.Enomoto, M.Hatana...Nucl.Acids Res. 2006, 34
From outliers to prototypes: Ordering data
Harmeling, S.Dornhege, G.Tax, D. M. J.Meinecke, F.Muller, K.Neurocomputing 2006, 69: 1608
Gene expression profiling highlights defective myogenesis in DMD patients and a possible role for bone morphogenetic protein 4
Sterrenburg, E.van der Wees, C. G.White, S. J.Turk, R.de Menezes, R. X.van Ommen, G. ...Neurobiol Dis 2006, 23(1): 228
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
TreeSOM: Cluster analysis in the self-organizing map
Samsonova, E. V.Kok, J. N.Ijzerman, A. P.Neural Networks 2006, 19(6): 935
Reconn, a new tool for pathway visualization and generation
Ligtenberg, W.P.A.Hilbers, P.A.J.Netherlands Bioinformatics Conference 2006
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
Strous, M.Pelletier, E.Mangenot, S.Rattei, T.Lehner, A.Taylor, M. W.Horn, M.Daims, H....Nature 2006, 440(7085): 790
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Gene therapy: is IL2RG oncogenic in T-cell development?
Pike-Overzet, K.de Ridder, D.Weerkamp, F.Baert, M. R.Verstegen, M. M.Brugman, M. H.Ho...Nature 2006, 443(7109)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Modelling strategies for the industrial exploitation of lactic acid bacteria
Teusink, B.Smid, E. J.Nat Rev Microbiol 2006, 4(1): 46
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Diversity of microRNAs in human and chimpanzee brain
Berezikov, E.Thuemmler, F.van Laake, L. W.Kondova, I.Bontrop, R.Cuppen, E.Plasterk, R...Nat Genet 2006, 38(12): 1375
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...