Publication overview
Selecting structural base classifiers for graph-based multiple classifier systems
Lee, W.J.Duin, R. P. W.Bunke, H.Lecture notes in computer science 2010, 5997: 155
Statistical analysis of gait data to assist clinical decision making
Koktas, N.S.Duin, R. P. W.Lecture notes in computer science 2010
On improving dissimilarity-based classifications using a statistical similarity seasure
Kim, S.W.Duin, R. P. W.Lecture notes in computer science 2010
An emperical comparison of kernel-based and dissimilarity-based feature spaces
Kim, S.W.Duin, R. P. W.Lecture notes in computer science 2010
A texton-based approach for the classification of lung parenchyma in CT images
Gangeh, M.J.Sorensen, L.Shaker, S.B.Kamel, M.S.de Bruijne, M.Loog, M.Lecture notes in computer science 2010
Non-euclidean dissimilarities: causes and informativeness
Duin, R.P.W.Pekalska, E.M.Lecture notes in computer science 2010
Feature-based dissimilarity space classification
Duin, R.P.W.Loog, M.Pekalska, E.M.Tax, D.M.J.Lecture notes in computer science 2010
Finding wormholes with Flickr Geotags
Clements, M.Serdyukov, P.de Vries, A. P.Reinders, M. J. T.Lecture notes in computer science 2010, 5993: 658
http://www.springerlink.com/content/2725712457234423/fulltext.pdf
Constrained parameter estimation for semi-supervised learning: The case of the nearest mean classifier
Loog, M.Lecture notes in artificial intelligence 2010, 6322: 291
http://www.springerlink.com/content/h8157g533678651j/fulltext.pdf
Molecular profiling of cytomegalovirus induced human CD8+ T cell differentiation
Hertoghs, KMLMoerland, PMJournal of Clinical Investigation 2010
Time Alignment Algorithms Based on Selected Mass Traces for Complex LC-MS Data
Christin, C.Hoefsloot, H. C.Smilde, A. K.Suits, F.Bischoff, R.Horvatovich, P. L.J Proteome Res 2010, 9(3): 1483
http://www.ncbi.nlm.nih.gov/pubmed/20070124
Comparison and integration of target prediction algorithms for microRNA studies
Zhang, Y.Verbeek, F. J.J Integr Bioinform 2010, 7(3)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
An evaluation of the performance of three semantic background knowledge sources in comparative anatomy
van Ophuizen, E. A.Leunissen, J. A.J Integr Bioinform 2010, 7(3)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Mining and analysing spatio-temporal patterns of gene expression in an integrative database framework
Belmamoune, M.Potikanond, D.Verbeek, F. J.J Integr Bioinform 2010, 7(3)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
e-BioFlow: Improving Practical Use of Workflow Systems in Bioinformatics.
Wassink, I.Ooms, M.Neerincx, P.van der Veer, G.Rauwerda, H.Leunissen, J.A.M.Breit, T....ITBAM 2010 2010
Tools in Scientific Workflow Composition
Kok, J. N.Lamprecht, A.L.Wilkonson, M.D.Isola 2010 2010: 258
Combining Subgroup Discovery and Permutation Testing to Reduce Reduncancy
de Bruin, J.S.Kok, J. N.Isola 2010 2010
Radiation-associated breast tumors display a distinct gene expression profile
Broeks, A.Braaf Linde, M.Wessels, L. F. A.van de Vijver, Marc J.de Bruin, M. L.Stoval...International journal of radiation oncology biology physics 2010, 76(2): 540
http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6T7X-4Y52ST0-...
Conceptual language models for domain-specific retrieval
Meij, E.Trieschnigg, D.de Rijke, M.Kraaij, W.Information processing management 2010
The Improbability of Harris Interest Points
Loog, M.Lauze, F.Ieee transactions on pattern analysis and machine intelligence 2010, 32(6): 1141
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5432198
Quantitative comparison of spot detection methods in fluorescence microscopy
Smal, I.Loog, M.Niessen, W.Meijering, E.Ieee transactions on medical imaging 2010, 29(2): 282
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5109713
Using multiscale spectra in regularizing covariance matrices for hyperspectral image classification
Jensen, A. F. C.Loog, M.Solberg, A. H. S.Ieee transactions on geoscience and remote sensing 2010, 48(4): 1851
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5393091
Sperical embeddings for non-euclidean dissimilarities
Wilson, R.C.Hancock, E.R.Pekalska, E.M.Duin, R.P.W.IEEE conference on Computer Vision and Pattern Recognition (CVPR) 2010
InfraWatch: Data management of large systems for monitoring infrastructural performance
Knobbe, A.Blockeel, H.Koopman, A.Calders, T.Obladen, B.Bosma, C.Galenkamp, H.Koenders...IDA 2010
Dissimilarity-based detection of schizophrenia
Ulas, A.Duin, R.P.W.Castellani, U.Loog, M.Bicego, M.Murino, M.ICPR 2010 workshop on Pattern Recognition Challenges in FMRI Neuroimaging 2010
The transcriptional response to chronic stress and glucocorticoid receptor blockade in the hippocampal dentate gyrus
Datson, Nicole A.Speksnijder, NielsMayer, Joseph L.Steenbergen, Peter J.Korobko, Oksa...Hippocampus 2010
http://www.ncbi.nlm.nih.gov/pubmed/21184481
Evaluation of gene expression signatures predictive for cytogenetic and molecular subtypes of pediatric acute myeloid leukemia
Balgobind, Brian V.van den Heuvel-Eibrink, Marry M.Menezes, Renee X.Reinhardt, DirkHo...Haematologica 2010
http://www.ncbi.nlm.nih.gov/pubmed/20971820
Influence of handshape information on automatic sign language recognition
ten Holt, G. A.Reinders, M. J. T.Hendriks, E. A.de Ridder, H.van Doorn, A. J.Gesture in embodied communication and human computer interaction 2010: 301
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
Swertz, M. A.van, der V.Tesson, B. M.Scheltema, R. A.Arends, D.Vera, G.Alberts, R.Dij...Genome Biol 2010, 11(3)
http://www.ncbi.nlm.nih.gov/pubmed/20214801
Challenges of molecular nutrition research 6: The Nutritional Phenotype database to store, share and evaluate nutritional systems biology studies
van Ommen, BenBouwman, JildauDragsted, LarsDrevon, Christian A.Elliott, RuanPhilipKap...Genes Nutr 2010
Connecting The Human Variome Project to Nutrigenomics
Kaput, J.Evelo, C. T.Perozzi, G.Van Ommen, B.Cotton, R.Genes Nutr 2010
Experimental optimization by evolutionary algorithms
Bäck, T.Knowles, J.Shir, O.M.GECCO 2010
The extracellular biology of the lactobacilli
Kleerebezem, M.Hols, P.Bernard, E.Rolain, T.Zhou, M.Siezen, R. J.Bron, P. A.FEMS Microbiol Rev 2010, 34(2): 199
http://www.ncbi.nlm.nih.gov/pubmed/20088967
Penalized canonical correlation analysis: unraveling the genetic background of complex diseases
Waaijenborg, S.Faculty of Medicine 2010
Tumour-specific methylation of PTPRG intron 1 locus in sporadic and Lynch syndrome colorectal cancer
van Roon, Eddy H. J.de Miranda, Noël F. C. C.van Nieuwenhuizen, Merlijn P.de Meijer, ...European Journal of Human Genetics: EJHG 2010
http://www.ncbi.nlm.nih.gov/pubmed/21150880
Current technological challenges in biomarker discovery and validation
Horvatovich, P. L.Bischoff, R.Eur J Mass Spectrom (Chichester, Eng) 2010, 16(1): 101
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Proof of Concept: Concept-based Biomedical Information Retrieval
Trieschnigg, R.B.CTIT 2010
http://eprints.eemcs.utwente.nl/18216/
Integration of DNA copy number alterations and prognostic gene expression signatures in breast cancer patients
Horlings, H. M.Lai, C.Nuyten, D. S. A.Halfwerk, H.Kristel, P.van Beers, E.Joosse, S. ...Clinical breast cancer 2010, 16: 651
Integrated analysis of microRNA and mRNA expression profiles in physiological myelopoiesis: role of hsa-mir-299-5p in CD34+ progenitor cells commitment
Tenedini, E.Roncaglia, E.Ferrari, F.Orlandi, C.Bianchi, E.Bicciato, S.Tagliafico, E.F...Cell Death and Dis 2010, 1(2)
http://dx.doi.org/10.1038/cddis.2010.5
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentation
Peric-Hupkes, D.Meuleman, W.Pagie, L.Bruggeman, S. W. M.Solovei, I.Brugman, W.Graf, S...Cell 2010, 38(4): 603
http://www.ncbi.nlm.nih.gov/pubmed/20513434
Novel candidate cancer genes identified by a large-scale cross-species comparative oncogenomics approach
Mattison, J.Kool, J.Uren, A. G.de Ridder, J.Wessels, L. F. A.Jonkers, J.Bignell, G. R...Cancer research 2010, 70: 883
http://www.ncbi.nlm.nih.gov/pubmed/20103622
Insertional mutagenesis in mice deficient for p15Ink4b, p16Ink4a, p21Cip1, and p27Kip1 reveals cancer gene interactions and correlations with tumor phenotypes
Kool, JaapUren, Anthony G.Martins, Carla P.Sie, Daoudde Ridder, JeroenTurner, Geoffre...Cancer Research 2010, 70(2): 520
http://www.ncbi.nlm.nih.gov/pubmed/20068150
Stratified generalized procrustes analysis
Bartoli, A.Pizarro, D.Loog, M.British Machine Vision Conference 2010 2010
Developing computational model-based diagnostics to analyse clinical chemistry data
van Schalkwijk, D. B.van, Bochove K.van, Ommen B.Freidig, A. P.van Someren, E. P.van ...Brief Bioinform 2010
http://www.ncbi.nlm.nih.gov/pubmed/20056728
Optical advances in skeletal imaging applied to bone metastases
Snoeks, E.Khmelinskii, A.Lelieveldt, B. P. F.Kaijzel, E. L.Lowik, CwgmBone 2010
http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6T4Y-50P9H1X-...
Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example
Rauwerda, Hande Jong, Markde Leeuw, WimSpaink, HermanBreit, TimoBMC Research Notes 2010, 3(1): 192
http://www.biomedcentral.com/1756-0500/3/192
Expression of a retinoic acid signature in circulating CD34 cells from coronary artery disease patients
van der Pouw, Kraan, TinekeSchirmer, StephanFledderus, JoostMoerland, PerryBaggen, Jo...BMC Genomics 2010, 11(1): 388
http://dx.doi.org/10.1186/1471-2164-11-388
Small RNA expression and strain specificity in the rat
Linsen, S. E.de Wit, E.de Bruijn, E.Cuppen, E.BMC Genomics 2010, 11: 249
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor
Frijters, R.Fleuren, W.Toonen, E. J.Tuckermann, J. P.Reichardt, H. M.van der Maaden, ...BMC Genomics 2010, 11: 359
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Early onset MSI-H colon cancer with MLH1 promoter methylation, is there a genetic predisposition?
van Roon, Eddy H. J.van Puijenbroek, MarjoMiddeldorp, Annekevan Eijk, Ronaldde Meijer...BMC Cancer 2010, 10: 180