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Publication overview

Organization of ventricular fibrillation in the human heart

ten Tusscher, K. H.Hren, R.Panfilov, A. V.

Circ.Res. 2007, 100(12)

Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays

French, P. J.Peeters, J.Horsman, S.Duijm, E.Siccama, I.van den Bent, M. J.Luider, T. ...

Cancer Res. 2007, 67(12): 5635

Relative effects of barrier precautions and topical antibiotics on nosocomial bacterial transmission: results of multi-compartment models

Boldin, B.Bonten, M. J.Diekmann, O.

Bull.Math.Biol. 2007, 69(7): 2227

Fasting induces a biphasic adaptive metabolic response in murine small intestine

Sokolovic, M.Wehkamp, D.Sokolovic, A.Vermeulen, J.Gilhuijs-Pederson, L. A.van Haaften...

BMC.Genomics 2007, 8: 361

Penalized canonical correlation analysis to quantify the association between gene expression and DNA markers

Waaijenborg, S.Zwinderman, A.

BMC.Bioinformatics. 2007

Exploiting combinatorial cultivation conditions to infer transcriptional regulation

Knijnenburg, T. Winde, J. H.Daran, J. M.ran-Lapujade, P.Pronk, J. T.Reinders, M....

BMC Genomics 2007, 8: 25

Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate

Datson, N. A.Morsink, M. C.Atanasova, S.Armstrong, V. W.Zischler, H.Schlumbohm, C.Dut...

BMC Genomics 2007, 8: 190

Error-threshold exists in fitness landscapes with lethal mutants

Takeuchi, N.Hogeweg, P.

BMC Evol.Biol. 2007, 7: 15

SIRAC: Supervised identification of regions of abberation in CGH datasets

Lai, C.Horlings, H.van den Vijver, M. J.Wessels, L. F. A.Reinders, M. J. T.

BMC BioinformaticsLai2007 2007

Statistical validation of megavariate effects in ASCA

Vis, D. J.Westerhuis, J. A.Smilde, A. K.van der Greef, J.

BMC Bioinformatics 2007, 8(1): 322

Orthology prediction at scalable resolution by phylogenetic tree analysis

van der Heijden, R. T.Snel, B.van Noort, V.Huynen, M. A.

BMC Bioinformatics 2007, 8: 83

Advancing translational research with the Semantic Web

Ruttenberg, A.Clark, T.Bug, W.Samwald, M.Bodenreider, O.Chen, H.Doherty, D.Forsberg, ...

BMC Bioinformatics 2007, 8

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation

Jelier, R.Jenster, G.Dorssers, L. C.Wouters, B. J.Hendriksen, P. J.Mons, B.Delwel, R....

BMC Bioinformatics 2007, 8: 14

Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties

Boekhorst, J.Snel, B.

BMC Bioinformatics 2007, 8: 356

Genomewide identification of prednisolone-responsive genes in acute lymphoblastic leukemia cells

Tissing, W. J.den Boer, M. L.Meijerink, J. P.Menezes, R. X.Swagemakers, S.van der Spe...

Blood 2007, 109(9): 3929

Distinct methylation patterns among infants with MLL rearranged acute lymphoblastic leukemia

Stumpel, D. J. P. M.Schneider, P.Van Roon, E. H. J.Boer, J. M.Menezes, R. X.Pieters, ...

Blood 2007, 110(11): 822


Retroviral vector insertion sites associated with dominant hematopoietic clones mark "stemness" pathways

Kustikova, O. S.Geiger, H.Li, Z.Brugman, M. H.Chambers, S. M.Shaw, C. A.Pike-Overzet,...

Blood 2007, 109(5): 1897

Taking the example of computer systems engineering for the analysis of biological cell systems

Pronk, T. E.Pimentel, A. D.Roos, M.Breit, T. M.

Biosystems 2007

DNA computing of solutions to knapsack problems

Henkel, C. V.Back, T.Kok, J. N.Rozenberg, G.Spaink, H. P.

Biosystems 2007, 88(1): 156

The formation of fibrils by intertwining of filaments: model and application to amyloid Abeta protein

van, Gestel Leeuw, S. W.

Biophys.J 2007, 92(4): 1157

Sequence similarity searches

Heringa, J.Pirovano, W.

Bioinformatics Methods Express Series 2007

An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences

Ye, K.Kosters, W. A.Ijzerman, A. P.

Bioinformatics 2007, 23(6): 687

Moderated statistical tests for assessing differences in tag abundance

Robinson, M. D.Smyth, G. K.

Bioinformatics 2007, 23(21): 2881

A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data

Post, L. J.Roos, M.Marshall, M. S.Driel, R. V.Breit, T. M.

Bioinformatics 2007

Optimized design and assessment of whole genome tiling arrays

Graf, S.Nielsen, F. G.Kurtz, S.Huynen, M. A.Birney, E.Stunnenberg, H.Flicek, P.

Bioinformatics 2007, 23(13)

Analyzing gene expression data in terms of gene sets: methodological issues

Goeman, J. J.Buhlmann, P.

Bioinformatics 2007, 23(8): 980

Efficient parameter estimation for spatio-temporal models of pattern formation: case study of Drosophila melanogaster

Fomekong-Nanfack, Y.Kaandorp, J. A.Blom, J.

Bioinformatics 2007, 23(24): 3356

Assessment of phylogenomic and orthology approaches for phylogenetic inference

Dutilh, B. E.van Noort, V.van der Heijden, R. T.Boekhout, T.Snel, B.Huynen, M. A.

Bioinformatics 2007, 23(7): 815

Computational methods for diffusion-influenced biochemical reactions

Dobrzynski, M.Rodriguez, J. V.Kaandorp, J. A.Blom, J. G.

Bioinformatics 2007, 23(15): 1969

Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes

de Ridder, J.Kool, J.Uren, A.Bot, J.Wessels, L.Reinders, M.

Bioinformatics 2007, 23(13)

Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases

Cavalieri, D.Castagnini, C.Toti, S.Maciag, K.Kelder, T.Gambineri, L.Angioli, S.Dolara...

Bioinformatics 2007, 23(19): 2631

FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes

Blom, E. J.Bosman, D. W.van Hijum, S. A.Breitling, R.Tijsma, L.Silvis, R.Roerdink, J....

Bioinformatics 2007, 23(9): 1161

Expression and genomic profiling of colorectal cancer

Cardoso, J.Boer, J.Morreau, H.Fodde, R.

Biochim Biophys Acta 2007, 1775(1): 103

Association between the DTNBP1 gene and intelligence: a case-control study in young patients with schizophrenia and related disorders and unaffected siblings

Zinkstok, J., Wilde O.van Amelsvoort, T. A.Tanck, M. W.Baas, F.Linszen, D. H.

Behav.Brain Funct. 2007, 3: 19


Wager, CarrieVaida, FlorinKauermann, Göran

Australian & New Zealand Journal of Statistics 2007, 49(2): 173

PO3-77 Particle Profiler: a model analysis of lipoprotein delipidation

van Schalkwijk, D. B.

Atherosclerosis Supplements 2007, 8(1): 36

Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat culatures

de Nicola, R.Hazelwood, L. Hulster, E. A. F.Walsh, M. C.Knijnenburg, T. A.Reinde...

Applied and Environmental MicrobiologyNicola2007 2007

A comparison of two methods for finding groups using heat maps and model based clustering

Colas, F.Meulenbelt, I.Houwing-Duistermaat, J.Kok, J.Slagboom, E.

Applications and Innovations in Intelligent Systems XV 2007: 119

A second-order, unconditionally positive, mass-conserving integration scheme for biochemical systems

Sommeijer, B.Kooi, B. W.Burghard, H.Bruggeman, J.

Appl.Num.math. 2007

Physiological and transcriptional presponses of saccaromyces cerevisiae to zinc limitation in chemostat cultures

Nicola, R. D.Hazelwood, L. A.Hulster, E. A. F. D.Walsh, M. C.Knijnenburg, T. A.Reinde...

Appl Environ Microbiol 2007, 73(23): 7680

Increased levels of circulating endothelial progenitor cells and circulating endothelial nitric oxide synthase in patients with gliomas

Zheng, P. P.Hop, W. C.Luider, T. M.Sillevis Smitt, P. A.Kros, J. M.

Ann Neurol 2007, 62(1): 40

Assessing the statistical validity of proteomics based biomarkers

Smit, S.van Breemen, M. J.Hoefsloot, H. C.Smilde, A. K.Aerts, J. Koster, C. G.

Anal Chim Acta 2007, 592(2): 210

An algorithm to estimate the importance of bacterial acquisition routes in hospital settings

Bootsma, M. C.Bonten, M. J.Nijssen, S.Fluit, A. C.Diekmann, O.

Am.J Epidemiol. 2007, 166(7): 841

Adenine nucleotide-creatine-phosphate module in myocardial metabolic system explains fast phase of dynamic regulation of oxidative phosphorylation

van Beek, J. H.

Am J Physiol Cell Physiol 2007, 293(3)

Distinctive expression of chemokines and transforming growth factor-beta signaling in human arterial endothelium during atherosclerosis

Volger, O. L.Fledderus, J. O.Kisters, N.Fontijn, R. D.Moerland, P. D.Kuiper, J.van Be...

Am J Pathol 2007, 171(1): 326

MYO15A (DFNB3) mutations in Turkish hearing loss families and functional modeling of a novel motor domain mutation

Kalay, E.Uzumcu, A.Krieger, E.Caylan, R.Uyguner, O.Ulubil-Emiroglu, M.Erdol, H.Kayser...

Am J Med Genet A 2007, 143(20): 2382

Genetic polymorphisms related to delirium tremens: a systematic review

van Munster, B. C.Korevaar, J. Rooij, S. E.Levi, M.Zwinderman, A. H.

Alcohol Clin Exp Res 2007, 31(2): 177

Using sorting by reversal: breakpoint graph for gene assembly in ciliates

Hoogeboom, H. J.Brijder, R.

AIP Conference Proceedings 2007

A simplified volume under the ROC hypersurface

Landgrebe, T. C. W.Duin, R. P. W.

Africa research journal 2007, 98(3): 94

On Emotion, Anticipation and adaption: Investigating the Potential of Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents

Broekens, J.Walter, A.verbeek, F. J.

Adaptive Behavior 2007