Publication overview
Organization of ventricular fibrillation in the human heart
ten Tusscher, K. H.Hren, R.Panfilov, A. V.Circ.Res. 2007, 100(12)
http://www.ncbi.nlm.nih.gov/pubmed/17540975
Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays
French, P. J.Peeters, J.Horsman, S.Duijm, E.Siccama, I.van den Bent, M. J.Luider, T. ...Cancer Res. 2007, 67(12): 5635
http://www.ncbi.nlm.nih.gov/pubmed/17575129
Relative effects of barrier precautions and topical antibiotics on nosocomial bacterial transmission: results of multi-compartment models
Boldin, B.Bonten, M. J.Diekmann, O.Bull.Math.Biol. 2007, 69(7): 2227
http://www.ncbi.nlm.nih.gov/pubmed/17453305
Fasting induces a biphasic adaptive metabolic response in murine small intestine
Sokolovic, M.Wehkamp, D.Sokolovic, A.Vermeulen, J.Gilhuijs-Pederson, L. A.van Haaften...BMC.Genomics 2007, 8: 361
http://www.ncbi.nlm.nih.gov/pubmed/17925015
Penalized canonical correlation analysis to quantify the association between gene expression and DNA markers
Waaijenborg, S.Zwinderman, A.BMC.Bioinformatics. 2007
Exploiting combinatorial cultivation conditions to infer transcriptional regulation
Knijnenburg, T. A.de Winde, J. H.Daran, J. M.ran-Lapujade, P.Pronk, J. T.Reinders, M....BMC Genomics 2007, 8: 25
http://dx.doi.org/10.1186/1471-2164-8-25
Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate
Datson, N. A.Morsink, M. C.Atanasova, S.Armstrong, V. W.Zischler, H.Schlumbohm, C.Dut...BMC Genomics 2007, 8: 190
http://www.ncbi.nlm.nih.gov/pubmed/17592630
Error-threshold exists in fitness landscapes with lethal mutants
Takeuchi, N.Hogeweg, P.BMC Evol.Biol. 2007, 7: 15
http://www.ncbi.nlm.nih.gov/pubmed/17286853
SIRAC: Supervised identification of regions of abberation in CGH datasets
Lai, C.Horlings, H.van den Vijver, M. J.Wessels, L. F. A.Reinders, M. J. T.BMC BioinformaticsLai2007 2007
Statistical validation of megavariate effects in ASCA
Vis, D. J.Westerhuis, J. A.Smilde, A. K.van der Greef, J.BMC Bioinformatics 2007, 8(1): 322
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Orthology prediction at scalable resolution by phylogenetic tree analysis
van der Heijden, R. T.Snel, B.van Noort, V.Huynen, M. A.BMC Bioinformatics 2007, 8: 83
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Advancing translational research with the Semantic Web
Ruttenberg, A.Clark, T.Bug, W.Samwald, M.Bodenreider, O.Chen, H.Doherty, D.Forsberg, ...BMC Bioinformatics 2007, 8
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation
Jelier, R.Jenster, G.Dorssers, L. C.Wouters, B. J.Hendriksen, P. J.Mons, B.Delwel, R....BMC Bioinformatics 2007, 8: 14
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties
Boekhorst, J.Snel, B.BMC Bioinformatics 2007, 8: 356
http://www.ncbi.nlm.nih.gov/pubmed/17888146
Genomewide identification of prednisolone-responsive genes in acute lymphoblastic leukemia cells
Tissing, W. J.den Boer, M. L.Meijerink, J. P.Menezes, R. X.Swagemakers, S.van der Spe...Blood 2007, 109(9): 3929
http://www.ncbi.nlm.nih.gov/pubmed/17218380
Distinct methylation patterns among infants with MLL rearranged acute lymphoblastic leukemia
Stumpel, D. J. P. M.Schneider, P.Van Roon, E. H. J.Boer, J. M.Menezes, R. X.Pieters, ...Blood 2007, 110(11): 822
Retroviral vector insertion sites associated with dominant hematopoietic clones mark "stemness" pathways
Kustikova, O. S.Geiger, H.Li, Z.Brugman, M. H.Chambers, S. M.Shaw, C. A.Pike-Overzet,...Blood 2007, 109(5): 1897
http://dx.doi.org/10.1182/blood-2006-08-044156
Taking the example of computer systems engineering for the analysis of biological cell systems
Pronk, T. E.Pimentel, A. D.Roos, M.Breit, T. M.Biosystems 2007
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
DNA computing of solutions to knapsack problems
Henkel, C. V.Back, T.Kok, J. N.Rozenberg, G.Spaink, H. P.Biosystems 2007, 88(1): 156
http://www.ncbi.nlm.nih.gov/pubmed/16860927
The formation of fibrils by intertwining of filaments: model and application to amyloid Abeta protein
van, Gestel J.de Leeuw, S. W.Biophys.J 2007, 92(4): 1157
http://www.ncbi.nlm.nih.gov/pubmed/17114229
Sequence similarity searches
Heringa, J.Pirovano, W.Bioinformatics Methods Express Series 2007
An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences
Ye, K.Kosters, W. A.Ijzerman, A. P.Bioinformatics 2007, 23(6): 687
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Moderated statistical tests for assessing differences in tag abundance
Robinson, M. D.Smyth, G. K.Bioinformatics 2007, 23(21): 2881
http://apps.isiknowledge.com/full_record.do?product=WOS&search_mode=Ge...
A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data
Post, L. J.Roos, M.Marshall, M. S.Driel, R. V.Breit, T. M.Bioinformatics 2007
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Optimized design and assessment of whole genome tiling arrays
Graf, S.Nielsen, F. G.Kurtz, S.Huynen, M. A.Birney, E.Stunnenberg, H.Flicek, P.Bioinformatics 2007, 23(13)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Analyzing gene expression data in terms of gene sets: methodological issues
Goeman, J. J.Buhlmann, P.Bioinformatics 2007, 23(8): 980
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Efficient parameter estimation for spatio-temporal models of pattern formation: case study of Drosophila melanogaster
Fomekong-Nanfack, Y.Kaandorp, J. A.Blom, J.Bioinformatics 2007, 23(24): 3356
http://www.ncbi.nlm.nih.gov/pubmed/17893088
Assessment of phylogenomic and orthology approaches for phylogenetic inference
Dutilh, B. E.van Noort, V.van der Heijden, R. T.Boekhout, T.Snel, B.Huynen, M. A.Bioinformatics 2007, 23(7): 815
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Computational methods for diffusion-influenced biochemical reactions
Dobrzynski, M.Rodriguez, J. V.Kaandorp, J. A.Blom, J. G.Bioinformatics 2007, 23(15): 1969
http://www.ncbi.nlm.nih.gov/pubmed/17537752
Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes
de Ridder, J.Kool, J.Uren, A.Bot, J.Wessels, L.Reinders, M.Bioinformatics 2007, 23(13)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases
Cavalieri, D.Castagnini, C.Toti, S.Maciag, K.Kelder, T.Gambineri, L.Angioli, S.Dolara...Bioinformatics 2007, 23(19): 2631
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes
Blom, E. J.Bosman, D. W.van Hijum, S. A.Breitling, R.Tijsma, L.Silvis, R.Roerdink, J....Bioinformatics 2007, 23(9): 1161
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Expression and genomic profiling of colorectal cancer
Cardoso, J.Boer, J.Morreau, H.Fodde, R.Biochim Biophys Acta 2007, 1775(1): 103
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Association between the DTNBP1 gene and intelligence: a case-control study in young patients with schizophrenia and related disorders and unaffected siblings
Zinkstok, J. R.de, Wilde O.van Amelsvoort, T. A.Tanck, M. W.Baas, F.Linszen, D. H.Behav.Brain Funct. 2007, 3: 19
http://www.ncbi.nlm.nih.gov/pubmed/17445278
MODEL SELECTION FOR PENALIZED SPLINE SMOOTHING USING AKAIKE INFORMATION CRITERIA
Wager, CarrieVaida, FlorinKauermann, GöranAustralian & New Zealand Journal of Statistics 2007, 49(2): 173
http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...
PO3-77 Particle Profiler: a model analysis of lipoprotein delipidation
van Schalkwijk, D. B.Atherosclerosis Supplements 2007, 8(1): 36
Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat culatures
de Nicola, R.Hazelwood, L. A.de Hulster, E. A. F.Walsh, M. C.Knijnenburg, T. A.Reinde...Applied and Environmental MicrobiologyNicola2007 2007
A comparison of two methods for finding groups using heat maps and model based clustering
Colas, F.Meulenbelt, I.Houwing-Duistermaat, J.Kok, J.Slagboom, E.Applications and Innovations in Intelligent Systems XV 2007: 119
A second-order, unconditionally positive, mass-conserving integration scheme for biochemical systems
Sommeijer, B.Kooi, B. W.Burghard, H.Bruggeman, J.Appl.Num.math. 2007
Physiological and transcriptional presponses of saccaromyces cerevisiae to zinc limitation in chemostat cultures
Nicola, R. D.Hazelwood, L. A.Hulster, E. A. F. D.Walsh, M. C.Knijnenburg, T. A.Reinde...Appl Environ Microbiol 2007, 73(23): 7680
Increased levels of circulating endothelial progenitor cells and circulating endothelial nitric oxide synthase in patients with gliomas
Zheng, P. P.Hop, W. C.Luider, T. M.Sillevis Smitt, P. A.Kros, J. M.Ann Neurol 2007, 62(1): 40
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Assessing the statistical validity of proteomics based biomarkers
Smit, S.van Breemen, M. J.Hoefsloot, H. C.Smilde, A. K.Aerts, J. M.de Koster, C. G.Anal Chim Acta 2007, 592(2): 210
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
An algorithm to estimate the importance of bacterial acquisition routes in hospital settings
Bootsma, M. C.Bonten, M. J.Nijssen, S.Fluit, A. C.Diekmann, O.Am.J Epidemiol. 2007, 166(7): 841
http://www.ncbi.nlm.nih.gov/pubmed/17644823
Adenine nucleotide-creatine-phosphate module in myocardial metabolic system explains fast phase of dynamic regulation of oxidative phosphorylation
van Beek, J. H.Am J Physiol Cell Physiol 2007, 293(3)
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Distinctive expression of chemokines and transforming growth factor-beta signaling in human arterial endothelium during atherosclerosis
Volger, O. L.Fledderus, J. O.Kisters, N.Fontijn, R. D.Moerland, P. D.Kuiper, J.van Be...Am J Pathol 2007, 171(1): 326
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
MYO15A (DFNB3) mutations in Turkish hearing loss families and functional modeling of a novel motor domain mutation
Kalay, E.Uzumcu, A.Krieger, E.Caylan, R.Uyguner, O.Ulubil-Emiroglu, M.Erdol, H.Kayser...Am J Med Genet A 2007, 143(20): 2382
http://www.ncbi.nlm.nih.gov/pubmed/17853461
Genetic polymorphisms related to delirium tremens: a systematic review
van Munster, B. C.Korevaar, J. C.de Rooij, S. E.Levi, M.Zwinderman, A. H.Alcohol Clin Exp Res 2007, 31(2): 177
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Using sorting by reversal: breakpoint graph for gene assembly in ciliates
Hoogeboom, H. J.Brijder, R.AIP Conference Proceedings 2007
http://dx.doi.org/10.1063/1.2793404
A simplified volume under the ROC hypersurface
Landgrebe, T. C. W.Duin, R. P. W.Africa research journal 2007, 98(3): 94
On Emotion, Anticipation and adaption: Investigating the Potential of Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents
Broekens, J.Walter, A.verbeek, F. J.Adaptive Behavior 2007