Publication overview
Creatine kinase in energy metabolic signaling in muscle
Kongas, O.van Beek, J. H. G. M.Nature Proceedings 2007
http://www.ebi.ac.uk/compneur-srv/biomodels-main/publ-model.do?mid=BIO...
Beyond standardization: dynamic software infrastructures for systems biology
Swertz, M. A.Jansen, R. C.Nat Rev Genet 2007, 8(3): 235
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
MetaNetwork: a computational protocol for the genetic study of metabolic networks
Fu, J.Swertz, M. A.Keurentjes, J. J.Jansen, R. C.Nat Protoc 2007, 2(3): 685
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
MMTV insertional mutagenesis identifies genes, gene families and pathways involved in mammary cancer
Theodorou, V.Kimm, M. A.Boer, M.Wessels, L.Theelen, W.Jonkers, J.Hilkens, J.Nat Genet 2007, 39(6): 759
http://dx.doi.org/10.1038/ng2034
Dichotomy in post-genomic microbiology
Felis, G. E.Molenaar, D.Dellaglio, F.Hylckama Vlieg, J. E.Nat Biotechnol 2007, 25(8): 848
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Personalization on a peer-to-peer television system
Wang, J.Pouwelse, J.Fokker, J.de Vries, A. P.Reinders, M. J. T.Multimedia Tools and Applications 2007
Chromosome rearrangements and the evolution of genome structuring and adaptability
Crombach, A.Hogeweg, P.Mol.Biol.Evol. 2007, 24(5): 1130
http://www.ncbi.nlm.nih.gov/pubmed/17322554
The use of in vitro peptide binding profiles and in silico ligand-receptor interaction profiles to describe ligand-induced conformations of the retinoid X receptor alpha ligand-binding domain
Folkertsma, S.van Noort, P. I.de Heer, A.Carati, P.Brandt, R.Visser, A.Vriend, G.de V...Mol Endocrinol 2007, 21(1): 30
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
A tutorial for DNA microarray expression-profiling
van Bakel, H.Holstege, F. C. P.Mol Cell Tutorial 2007
Identification of glioma neovascularization-related proteins by using MALDI-FTMS and nano-LC fractionation to microdissected tumor vessels
Mustafa, D. A.Burgers, P. C.Dekker, L. J.Charif, H.Titulaer, M. K.Smitt, P. A.Luider,...Mol Cell Proteomics 2007, 6(7): 1147
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Towards a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
Collins, S. R.Kemmeren, P.Zhao, X. C.Greenblatt, J. F.Spencer, F.Holstege, F. C.Weiss...Mol Cell Proteomics 2007
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes
de Groot, M. J.ran-Lapujade, P.van Breukelen, B.Knijnenburg, T. A.de Hulster, E. A.Re...Microbiology 2007, 153: 3864
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Heteroclinic orbits indicate overexploitation in predator-prey systems with a strong Allee effect
van Voorn, G. A.Hemerik, L.Boer, M. P.Kooi, B. W.Math.Biosci. 2007, 209(2): 451
http://www.ncbi.nlm.nih.gov/pubmed/17521681
A new class of non-linear stochastic population models with mass conservation
Kooijman, S. A.Grasman, J.Kooi, B. W.Math.Biosci. 2007, 210(2): 378
http://www.ncbi.nlm.nih.gov/pubmed/17659307
A biodiversity-inspired approach to aquatic ecosystem modelling
Bruggeman, J.Kooijman, S. A. L. M.Limnol Oceanogr 2007
Ectopic retroviral expression of LMO2, but not IL2Rgamma, blocks human T-cell development from CD34+ cells: implications for leukemogenesis in gene therapy
Pike-Overzet, K.de Ridder, D.Weerkamp, F.Baert, M. R. M.Verstegen, M. M. A.Brugman, M...Leukemia 2007, 21(4): 754
http://dx.doi.org/10.1038/sj.leu.2404563
From micro to macro: how the overlap graph determines the reduction graph in ciliates
Rozenberg, G.Brijder, R.Hoogeboom, H. J.Lecture Notes in Computer Science 2007
http://dx.doi.org/10.1007/978-3-540-74240-1_14
Kernel Combination Versus Classifier Combination
Lee, S. W.Verzakov, S.Duin, R. P. W.Lecture Notes in Computer Science 2007(4472): 22
On Combining Dissimilarity-Based Classifiers to Solve the Small Sample Size Problem for Appearance-Based Face Recognition
Kim, S. W.Duin, R. P. W.Lecture Notes in Computer Science 2007(4509): 110
A string-baed model for simple gene assembly
Brijder, R.Petre, I.Langille, M.Lecture Notes in Computer Science 2007
http://dx.doi.org/10.1007/978-3-540-74240-1_15
Characterizing reduction graphs for gene assembly in ciliates
Brijder, R.Hoogeboom, H. J.Lecture Notes in Computer Science 2007
http://dx.doi.org/10.1007/978-3-540-73208-2_14
Group-induced vector spaces
Bicego, M.Pekalska, E.Duin, R. P. W.Lecture Notes in Computer Science 2007(4472): 190
Producer/Consumer in membrane systems and petri nets
Bernardini, F.Gheorghe, M.Lecture Notes in Computer Science 2007
http://dx.doi.org/10.1007/978-3-540-73001-9_5
Validation of SELDI TOF MS serum protein profiles for renal cell carcinoma in new populations
Engwegen, J. Y.Mehra, N.Haanen, J. B.Bonfrer, J. M.Schellens, J. H.Voest, E. E.Beijne...Lab Invest 2007
On the generality of crowding: Visual crowding in size, saturation, and hue compared to orientation
van den Berg, R.Roerdink, J. B.Cornelissen, F. W.Journal of Vision 2007, 7(2): 1
TIMP: an R package for modeling multi-way spectroscopic measures
Mullen, K. M.van Stokkum, I. H. M.Journal of Statistical Software 2007, 18
http://www.jstatsoft.org/v18/i03/
An introduction to the special volume "Spectroscopy and Chemometrics in R"
Mullen, K. M.van Stokkum, I. H. M.Journal of Statistical Software 2007, 18
http://www.jstatsoft.org/v18/i01/
FluxSimulator: An R Package to Simulate Isotopomer Distributions in Metabolic Networks
Binsl, T. W.Mullen, K. M.van Stokkum, I. H. M.Heringa, J.van Beek, J. H. G. M.Journal of Statistical Software 2007, 18(7): 1
VLAM-G: Interactive Data Driven Workflow Engine for Grid-enabled Resources
Korkhov, V.Vasyunin, A.Wibisono, A.Belloum, A.Inda, M.Roos, M.Breit, T.de Laat, C.Her...Journal of Scientific Programming 2007
Developmental Anatomy Ontology of Zebrafish: an Integrative semantic framework
Belmamoune, M.verbeek, F. J.Journal of Integrative Bioinformatics 2007
Algorithms for separable nonlinear least squares with application to modelling time-resolved spectra
Mullen, K. M.Vengris, M.van Stokkum, I. H. M.Journal of Global Optimization 2007, 38: 201
Grey Component Analysis
Westerhuis, J. A.Derks, E. P. P. A.Hoefsloot, H. C. J.Smilde, A. K.Journal of Chemometrics 2007
Comparative Urine Analysis by Liquid Chromatography-Mass Spectrometry and Multivariate Statistics: Method Development, Evaluation, and Application to Proteinuria
Kemperman, R. F.Horvatovich, P. L.Hoekman, B.Reijmers, T. H.Muskiet, F. A.Bischoff, R...J.Proteome Res. 2007, 6(1): 194
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
A flexible approach to induced fit docking
Nabuurs, S. B.Wagener, M.de, Vlieg J.J.Med.Chem. 2007, 50(26): 6507
http://www.ncbi.nlm.nih.gov/pubmed/18031000
The M235T polymorphism in the angiotensinogen gene is associated with the risk of malignant hypertension in white patients
van den Born, B. J.van Montfrans, G. A.Uitterlinden, A. G.Zwinderman, A. H.Koopmans, ...J.Hypertens. 2007, 25(11): 2227
http://www.ncbi.nlm.nih.gov/pubmed/17921816
Influence of (sub)mesoscale eddies on the soft-tissue carbon pump
Dijkstra, H. A.Omta, A. W.Kooijman, S. A. L. M.J.Geophys.Res. 2007
http://www.phys.uu.nl/%7Edijkstra/pubs2006.html
FOXO3a induces differentiation of Bcr-Abl-transformed cells through transcriptional down-regulation of Id1
Birkenkamp, K. U.Essafi, A.van, der V.da, Costa M.Hui, R. C.Holstege, F.Koenderman, L...J.Biol.Chem. 2007, 282(4): 2211
http://www.ncbi.nlm.nih.gov/pubmed/17132628
Likelihood of crystallization: experimental and computational approaches
Carugo, O.jnovic-Carugo, K.Gorbalenya, A. E.Tucker, P.J.Appl.Cryst. 2007, 40: 392
Human coronavirus 229E papain-like proteases have overlapping specificities but distinct functions in viral replication
Ziebuhr, J.Schelle, B.Karl, N.Minskaia, E.Bayer, S.Siddell, S. G.Gorbalenya, A. E.Thi...J Virol 2007
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Arterivirus Subgenomic mRNA Synthesis and Virion Biogenesis Depend on the Multifunctional nsp1 Autoprotease
Tijms, M. A.Nedialkova, D. D.Zevenhoven-Dobbe, J. C.Gorbalenya, A. E.Snijder, E. J.J Virol 2007, 81(19): 10496
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Structural and functional characterization of sapovirus RNA-dependent RNA polymerase
Fullerton, S. W.Blaschke, M.Coutard, B.Gebhardt, J.Gorbalenya, A.Canard, B.Tucker, P....J Virol 2007, 81(4): 1858
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Examples of NIR based real time release in tablet manufacturing
Skibsted, E. T.Westerhuis, J. A.Smilde, A. K.Witte, D. T.J Pharm Biomed Anal 2007, 43(4): 1297
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Identification of novel biomarkers in pediatric primitive neuroectodermal tumors and ependymomas by proteome-wide analysis
de Bont, J. M.den Boer, M. L.Kros, J. M.Passier, M. M.Reddingius, R. E.Smitt, P. A.Lu...J Neuropathol Exp Neurol 2007, 66(6): 505
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Evidence for functional significance of the permuted C motif in Co2+-stimulated RNA-dependent RNA polymerase of infectious bursal disease virus
Letzel, T.Mundt, E.Gorbalenya, A. E.J Gen Virol 2007, 88: 2824
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Gene-expression and immunohistochemical study of specific T-cell subsets and accessory cell types in the transformation and prognosis of follicular lymphoma
Glas, A. M.Knoops, L.Delahaye, L.Kersten, M. J.Kibbelaar, R. E.Wessels, L. A.van Laar...J Clin Oncol 2007, 25(4): 390
http://dx.doi.org/10.1200/JCO.2006.06.1648
Gammaretrovirus-mediated correction of SCID-X1 is associated with skewed vector integration site distribution in vivo
Schwarzwaelder, K.Howe, S. J.Schmidt, M.Brugman, M. H.Deichmann, A.Glimm, H.Schmidt, ...J Clin Invest 2007, 117(8): 2241
http://dx.doi.org/10.1172/JCI31661
Vector integration is nonrandom and clustered and influences the fate of lymphopoiesis in SCID-X1 gene therapy
Deichmann, A.Hacein-Bey-Abina, S.Schmidt, M.Garrigue, A.Brugman, M. H.Hu, J.Glimm, H....J Clin Invest 2007, 117(8): 2225
http://dx.doi.org/10.1172/JCI31659
Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification
Schuemie, M. J.Mons, B.Weeber, M.Kors, J. A.J Biomed Inform 2007, 40(3): 316
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Gene expression profiling of liver cells after copper overload in vivo and in vitro reveals new copper-regulated genes
Muller, P.van Bakel, H.van de Sluis, B.Holstege, F.Wijmenga, C.Klomp, L. W.J Biol Inorg Chem 2007, 12(4): 495
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...
Role of the synthase domain of Ags1p in cell wall alpha-glucan biosynthesis in fission yeast
Vos, A.Dekker, N.Distel, B.Leunissen, J. A.Hochstenbach, F.J Biol Chem 2007, 282(26): 18969
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...